SacchCere

class SacchCere(root: str | Path, download: bool | None = False, train_ratio: float | None = 0.2, dtype: dtype = torch.float32, seed: int | None = 0)[source]

Bases: Dataset

A pair of direct interaction layer and association layer from the SacchCere multiplex GPI network. The SacchCere network consider different kinds of protein and genetic interactions for Saccharomyces Cerevisiae in BioGRID, a public database that archives and disseminates genetic and protein interaction data from humans and model organisms. There are in total 1,337 common nodes across two layers of networks. The original multi-layer networks can be found here.

Graph

#nodes

#edges

#node attrs

#edge attrs

SacchCere-direct

5,042

54,045

0

0

SacchCere-association

1,401

3,918

0

0